EcoService Models Library (ESML)
Home
Search EMs
My
EMs 
Learn about
ESML
View ESML Data Maploading
EM: A spatially explicit end-to-end marine ecosystem model with dynamically integrated physics, ecology and socio-economic modules (EM-978)
Collapse All
Expand AllEM Identity and Description
EM Identification
|
EM ID
em.detail.idHelp
?
|
EM-978 |
|
EM Short Name
em.detail.shortNameHelp
?
|
Atlantis ecosystem model |
|
EM Full Name
em.detail.fullNameHelp
?
|
A spatially explicit end-to-end marine ecosystem model with dynamically integrated physics, ecology and socio-economic modules |
|
EM Source or Collection
em.detail.emSourceOrCollectionHelp
?
|
None |
|
EM Source Document ID
|
456 |
|
Document Author
em.detail.documentAuthorHelp
?
|
Audzijonyte, A., Pethybridge, H., Porobic, J., Gorton, R., Kaplan, I. and Fulton, E.A |
|
Document Year
em.detail.documentYearHelp
?
|
2019 |
|
Document Title
em.detail.sourceIdHelp
?
|
Atlantis: A spatially explicit end‐to‐end marine ecosystem model with dynamically integrated physics, ecology and socio‐economic modules |
|
Document Status
em.detail.statusCategoryHelp
?
|
Peer reviewed and published |
|
Comments on Status
em.detail.commentsOnStatusHelp
?
|
Published journal manuscript |
Software and Access
| https://research.csiro.au/atlantis/home/links/ | |
|
Contact Name
em.detail.contactNameHelp
?
|
Asta Audzijonyte |
|
Contact Address
|
Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, Australia |
|
Contact Email
|
asta.audzijonyte@utas.edu.au |
EM Description
|
Summary Description
em.detail.summaryDescriptionHelp
?
|
Marine ecosystem management is increasingly expected to take into account a wide range of ecological and socio-economic factors. Decision-making is helped by end-to-end ecosystem models that allow exploration of alternative management scenarios given a complex range of interacting factors. We present Atlantis – a spatially structured largely deterministic end-to-end marine ecosystem model written in C, available for all major operating systems, based on dynamically interacting physics, biology, fisheries, management, assessment and economics submodels. A detailed installation guide and example application files are also provided. One of the main features of Atlantis is its modularity. At the simplest level Atlantis can have uniform forcing of oceanographic processes, a single primary producer and a consumer. At the most complex level, Atlantis can be used with a range of environmentally driven ecological responses, complex and habitat-dependent food web, dynamic assessment, management and fishing effort driven by market forces and human behaviour. The combination chosen should be guided by the available data and the questions to be answered. Atlantis provides a large and customizable list of output files and summary statistics that can be analysed and plotted using a number of dedicated r packages. When applying the Atlantis package, the users should be aware of the caveats associated with complex models, such as parameter and structural model uncertainty and challenges interpreting interactions of multiple processes. |
|
Specific Policy or Decision Context Cited
em.detail.policyDecisionContextHelp
?
|
Not reported |
|
Biophysical Context
|
N/A |
|
EM Scenario Drivers
em.detail.scenarioDriverHelp
?
|
No scenarios presented |
EM Relationship to Other EMs or Applications
|
Method Only, Application of Method or Model Run
em.detail.methodOrAppHelp
?
|
Method Only |
|
New or Pre-existing EM?
em.detail.newOrExistHelp
?
|
New or revised model |
Related EMs (for example, other versions or derivations of this EM) described in ESML
em.detail.relatedEmHelp
?
|
Document ID for related EM
em.detail.relatedEmDocumentIdHelp
?
|
None |
|
EM ID for related EM
em.detail.relatedEmEmIdHelp
?
|
EM-981 | EM-983 | EM-985 | EM-990 | EM-991 |
EM Modeling Approach
EM Relationship to Time
|
EM Temporal Extent
em.detail.tempExtentHelp
?
|
Not applicable |
|
EM Time Dependence
em.detail.timeDependencyHelp
?
|
time-dependent |
|
EM Time Reference (Future/Past)
em.detail.futurePastHelp
?
|
both |
|
EM Time Continuity
em.detail.continueDiscreteHelp
?
|
continuous |
|
EM Temporal Grain Size Value
em.detail.tempGrainSizeHelp
?
|
Not applicable |
|
EM Temporal Grain Size Unit
em.detail.tempGrainSizeUnitHelp
?
|
Not applicable |
EM Spatial Extent
|
Bounding Type
em.detail.boundingTypeHelp
?
|
Physiographic or ecological |
|
Spatial Extent Name
em.detail.extentNameHelp
?
|
Not applicable |
|
Spatial Extent Area (Magnitude)
em.detail.extentAreaHelp
?
|
Not applicable |
Spatial Distribution of Computations
|
EM Spatial Distribution
em.detail.distributeLumpHelp
?
|
spatially distributed (in at least some cases) |
|
Spatial Grain Type
em.detail.spGrainTypeHelp
?
|
area, for pixel or radial feature |
|
Spatial Grain Size
em.detail.spGrainSizeHelp
?
|
Not applicable |
EM Structure and Computation Approach
|
EM Computational Approach
em.detail.emComputationalApproachHelp
?
|
Analytic |
|
EM Determinism
em.detail.deterStochHelp
?
|
deterministic |
|
Statistical Estimation of EM
em.detail.statisticalEstimationHelp
?
|
|
Model Checking Procedures Used
|
Model Calibration Reported?
em.detail.calibrationHelp
?
|
Not applicable |
|
Model Goodness of Fit Reported?
em.detail.goodnessFitHelp
?
|
Not applicable |
|
Goodness of Fit (metric| value | unit)
em.detail.goodnessFitValuesHelp
?
|
None |
|
Model Operational Validation Reported?
em.detail.validationHelp
?
|
Not applicable |
|
Model Uncertainty Analysis Reported?
em.detail.uncertaintyAnalysisHelp
?
|
Not applicable |
|
Model Sensitivity Analysis Reported?
em.detail.sensAnalysisHelp
?
|
Not applicable |
|
Model Sensitivity Analysis Include Interactions?
em.detail.interactionConsiderHelp
?
|
Not applicable |
EM Locations, Environments, Ecology
Location of EM Application
Terrestrial location (Classification hierarchy: Continent > Country > U.S. State [United States only])
em.detail.relationToSpaceTerrestrialHelp
?
| None |
Marine location (Classification hierarchy: Realm > Region > Province > Ecoregion)
em.detail.relationToSpaceMarineHelp
?
| None |
Centroid Lat/Long (Decimal Degree)
|
Centroid Latitude
em.detail.ddLatHelp
?
|
Not applicable |
|
Centroid Longitude
em.detail.ddLongHelp
?
|
Not applicable |
|
Centroid Datum
em.detail.datumHelp
?
|
Not applicable |
|
Centroid Coordinates Status
em.detail.coordinateStatusHelp
?
|
Not applicable |
Environments and Scales Modeled
|
EM Environmental Sub-Class
em.detail.emEnvironmentalSubclassHelp
?
|
Aquatic Environment (sub-classes not fully specified) | Rivers and Streams | Inland Wetlands | Lakes and Ponds | Near Coastal Marine and Estuarine | Open Ocean and Seas |
|
Specific Environment Type
em.detail.specificEnvTypeHelp
?
|
Multiple |
|
EM Ecological Scale
em.detail.ecoScaleHelp
?
|
Ecological scale corresponds to the Environmental Sub-class |
Scale and taxa of organisms modeled
Scale of differentiation of organisms modeled
em.detail.nameOfOrgsOrGroupsHelp
?
|
EM Organismal Scale
em.detail.orgScaleHelp
?
|
Not applicable |
Taxonomic level and name of organisms or groups identified
taxonomyHelp
?
| None Available |
EnviroAtlas URL
em.detail.enviroAtlasURLHelp
?
| Average Annual Precipitation, Big game hunting recreation demand |
EM Ecosystem Goods and Services (EGS) potentially modeled, by classification system
CICES v 4.3 - Common International Classification of Ecosystem Services (Section > Division > Group > Class)
em.detail.cicesHelp
?
|
(Environmental Subclass > Ecological End-Product (EEP) > EEP Subclass > EEP Modifier)
fegs2Help
?
|
EM Variable Names (and Units)
Predictor
em.detail.variablesPredictorHelp
?
Intermediate
|
Intermediate (Computed) Variables (and Units)
em.detail.intermediateVariableHelp
?
|
None |
Response
em.detail.variablesResponseHelp
?
|
Observed Response Variables (and Units)
em.detail.observedResponseHelp
?
|
None |
|
Computed Response Variables (and Units)
view details (5 variables)
em.detail.computedResponseHelp
?
|